Pymol|Pymol命令 - 知乎 - 知乎专栏
1. 透明度设置. 1.1 cartoon透明度. # pymol set cartoon_transparency, 0.5, <object> # 50%透明度, <object>是对象的名字 set cartoon_transparency, 0.5, <sele> # 50%透明度, <sele>是选择的部分. 2.
PyMOL绘图进阶 - 知乎 - 知乎专栏
"Sertyle" 看到Sergey的slides里美漫风格的蛋白质展示图，不得不感慨斯拉夫民族的艺术细胞浓度过高。 以上三张图截取自Sergey的slides (https://docs.google.com/presentation/d/1_fe78PR82GiXIv3PIEVP6Iumf4wdxCYJZyaxb5pUgE/ edit?usp=sharing, https://docs.google.com/presentation/d/1Zy7lf_LBK0_G3e7YQLSPP5aj_- AR5I131fTsxJrLdg4/edit?usp=sharing) 细节侧链美漫风. reinitialize. fetch 1pga. select resn HOH .
Cartoon - PyMOLWiki
2017年12月17日 · If you have a structure with just a alpha carbon trace, you can get a cartoon by. set cartoon_trace,1 show cartoon. If your structure is more than just the CA backbone, the cartoon representation will look incorrect, so use it just with CA trace.
PyMOL必备绘图技巧，从此游刃有余！ - 知乎专栏
在文献中经常看到蛋白结构显示为不同的卡通（Cartoon）样式，如设置Cartoon样式为“Cylindrical Helices”，可以在菜单栏点击“Setting -> Cartoon -> Cylindrical Helices”；
Examples of nucleic acid cartoons - PyMOLWiki
2010年1月27日 · set cartoon_ring_mode, value. value. effect. 0. stick from backbone atom to N1 of purines and N3 of pyrimidines. 1. simple plane for ribose and base rings covering area between ring bonds. 2. simple plane for ribose and base rings covering area …
Cartoon transparency - PyMOLWiki
2018年12月14日 · Overview. This setting changes the transparency of the cartoon representation. As of PyMOL version 2.3, cartoon transparency is now an atom-level setting. This allows for a cartoon selection to be transparent without creating an additional object.
setting:cartoon [PyMOL Documentation]
2013年11月6日 · Cartoon Settings. cartoon_color (color, default:-1) controls the color of the cartoon representation. cartoon_cylindrical_helices (boolean, default: off) controls whether helices are displayed as cylinders or as a residue-based cartoon. cartoon_debug (integer: 0-3, default: 0) is for development.
吕头的Pymol学习笔记（六）：关于cartoon - 结构生物学 - 新科学 …
2011年9月21日 · Pymol> set cartoon_fancy_sheets, 1 这样你得到的helix的边上会带有一个很细的cylinder，也就是上面几张图中的显示方式。 此时设置helix的厚度，宽度，以及这个cylinder的半径分别是：
Pymol作图技巧之cartoon和surface镶嵌模型 - 知乎 - 知乎专栏
2019年9月23日 · Pymol创建一定透明度的surface，里面包含cartoon模型。. show cartoon #显示cartoon. show surface #显示表面. hide lines #隐藏lines. set surface_color,green #修改表面颜色，green为可修改参数. set transparency,0.4 #设置表面透明度，0.4为可修改参数，一般0.1到0.9. set surface_quality,1 #设置表面 ...
Making Pretty Pictures with PyMOL | Oxford Protein Informatics …
set cartoon_discrete_colours, on/off. When colouring cartoon representations by secondary structure, by default the colour for beta strands can extend slightly into the loop regions. Change the setting above to ‘on’ to stop this – I think it makes the image look a lot tidier!