Nov 21, 2019 · 1) With Cooks cut off, these are my results; out of 598019 with nonzero total read count adjusted p-value < 0.05; LFC > 0 (up) : 965, 0.16%; LFC < 0 (down) : 111, 0.019%; outliers [1] : 12602, 2.1% ; low counts [2] : 0, 0%. A lot of the p values and padj are NA as expected. 2)Turning Cooks cut off to False gets these results; out of 598019 with ...